Datatypes eligible for processing
Assay-specific workflow availability
The table below shows the availability of processing workflows for different data files generated through various ‘omics assays.
Assay
|
Germline SNV
|
Somatic SNV
|
Copy Number Variation (CNV)
|
Structural variants (SV)
|
Microsatellite Instability (MSI)
|
Raw counts
|
WES
|
✅
|
✅
|
✖️
|
✖️
|
✅
|
:Not_applicable:
|
WGS
|
✅
|
✅
|
✅
|
✅
|
✅
|
:Not_applicable:
|
Bulk RNAseq
|
:Not_applicable:
|
:Not_applicable:
|
:Not_applicable:
|
:Not_applicable:
|
:Not_applicable:
|
✅
|
Single Cell RNAseq
|
:Not_applicable:
|
:Not_applicable:
|
:Not_applicable:
|
:Not_applicable:
|
:Not_applicable:
|
✅
|