Eligible Datatypes and Workflows
Datatypes eligible for processing
Assay-specific workflow availability
The table below shows the availability of processing workflows for different data files generated through various ‘omics assays.
Assay | Germline SNV | Somatic SNV | Copy Number Variation (CNV) | Structural variants (SV) | Microsatellite Instability (MSI) | Raw counts |
WES | ✅ | ✅ | ✖️ | ✖️ | ✅ | :Not_applicable: |
WGS | ✅ | ✅ | ✅ | ✅ | ✅ | :Not_applicable: |
Bulk RNAseq | :Not_applicable: | :Not_applicable: | :Not_applicable: | :Not_applicable: | :Not_applicable: | ✅ |
Single Cell RNAseq | :Not_applicable: | :Not_applicable: | :Not_applicable: | :Not_applicable: | :Not_applicable: | ✅ |